Remove deprecated packages, mostly from Emacswiki

See: https://github.com/melpa/melpa/pull/5008

custom.el

  ;; Your init file should contain only one such instance.
  ;; If there is more than one, they won't work right.
  '(custom-enabled-themes (quote (sanityinc-tomorrow-night)))
- '(custom-safe-themes (quote ("06f0b439b62164c6f8f84fdda32b62fb50b6d00e8b01c2208e55543a6337433a" "4cf3221feff536e2b3385209e9b9dc4c2e0818a69a1cdb4b522756bcdf4e00a4" default)))
- '(org-startup-truncated nil))
+ '(custom-safe-themes
+   (quote
+    ("06f0b439b62164c6f8f84fdda32b62fb50b6d00e8b01c2208e55543a6337433a" "4cf3221feff536e2b3385209e9b9dc4c2e0818a69a1cdb4b522756bcdf4e00a4" default)))
+ '(org-startup-truncated nil)
+ '(package-selected-packages
+   (quote
+    (flycheck solidity-mode sql-indent pip-requirements css-eldoc less-css-mode scss-mode sass-mode mmm-mode rainbow-mode tagedit yasnippet yagist ws-butler whole-line-or-region whitespace-cleanup-mode volatile-highlights unfill undo-tree switch-window smex smarty-mode smartparens rainbow-delimiters php-mode pandoc-mode page-break-lines ox-pandoc ox-gfm org-pomodoro multiple-cursors move-dup markdown-mode magit-gh-pulls json-mode js-comint iedit idomenu ido-completing-read+ highlight-symbol highlight-escape-sequences helm-swoop helm-gtags guide-key gitignore-mode github-clone github-browse-file gitconfig-mode git-timemachine git-messenger fullframe fill-column-indicator expand-region duplicate-thing dtrt-indent diminish csv-mode color-theme-sanityinc-tomorrow color-theme-sanityinc-solarized coffee-mode clean-aindent-mode bug-reference-github browse-kill-ring auto-complete anzu ace-jump-mode ac-js2))))
 (custom-set-faces
  ;; custom-set-faces was added by Custom.
  ;; If you edit it by hand, you could mess it up, so be careful.

init.el

 ;;("melpa" . "http://melpa.milkbox.net/packages/"))
 
 ;; sort apropos by rlevance
+
+;; Added by Package.el.  This must come before configurations of
+;; installed packages.  Don't delete this line.  If you don't want it,
+;; just comment it out by adding a semicolon to the start of the line.
+;; You may delete these explanatory comments.
+(package-initialize)
+
 (setq apropos-sort-by-scores t)
 
 ;; bind M-i to imenu
 (require-package 'diminish)
 
 (require 'init-themes)
-(require 'init-dired)
 (require 'init-isearch)
 
 (require 'init-recentf)
-(require 'init-ido)
 (require 'init-auto-complete)
 (require 'init-windows)
 
 
 (require 'capnp-mode)
 
-(require 'init-crontab)
 (require 'init-org)
 (require 'init-markdown)
 (require 'init-ox-pandoc)

lisp/init-csv.el

 (require-package 'csv-mode)
-(require-package 'csv-nav)
 
 (add-auto-mode 'csv-mode "\\.[Cc][Ss][Vv]\\'")
 

lisp/init-git.el

 ;; TODO: link commits from vc-log to magit-show-commit
 ;; TODO: smerge-mode
-(require-package 'git-blame)
 (require-package 'gitignore-mode)
 (require-package 'gitconfig-mode)
 (require-package 'git-messenger) ;; Though see also vc-annotate's "n" & "p" bindings

lisp/init-html.el

-(require-package 'tidy)
-(add-hook 'html-mode-hook (lambda () (tidy-build-menu html-mode-map)))
-
 (require-package 'tagedit)
 (after-load 'sgml-mode
   (tagedit-add-paredit-like-keybindings)

lisp/init-ido.el

 ;; Use C-f during file selection to switch to regular find-file
 (require 'ido)
 (ido-mode t)
-(ido-everywhere t)
+(ido-everywhere nil)
 (setq ido-enable-flex-matching t)
 (setq ido-use-filename-at-point nil)
 (setq ido-auto-merge-work-directories-length 0)
 (setq ido-use-virtual-buffers t)
 
 (when (eval-when-compile (>= emacs-major-version 24))
- (require-package 'ido-ubiquitous)
+ (require-package 'ido-completing-read+)
  (ido-ubiquitous-mode t))
 
 ;; Use smex to handle M-x

lisp/init-nxml.el

         (backward-char) (insert "\n"))
       (indent-region begin end)))
 
-;;----------------------------------------------------------------------------
-;; Integration with tidy for html + xml
-;;----------------------------------------------------------------------------
-(require-package 'tidy)
-(add-hook 'nxml-mode-hook (lambda () (tidy-build-menu nxml-mode-map)))
-
-
 (provide 'init-nxml)

lisp/init-org.el

 (when (< emacs-major-version 24)
   (require-package 'org))
-(require-package 'org-fstree)
-;(when *is-a-mac*
-;  (require-package 'org-mac-link)
-;  (autoload 'org-mac-grab-link "org-mac-link" nil t)
-;  (require-package 'org-mac-iCal))
 
 (define-key global-map (kbd "C-c l") 'org-store-link)
 (define-key global-map (kbd "C-c a") 'org-agenda)